Test Overview

A stool analysis
is a series of tests done on a stool (feces) sample to help diagnose certain
conditions affecting the
digestive tract. These conditions can include
infection (such as from
viruses, or
bacteria), poor nutrient absorption, or cancer.

For a stool analysis, a stool sample is collected in a clean
container and then sent to the laboratory. Laboratory analysis includes
microscopic examination, chemical tests, and microbiologic tests. The stool
will be checked for color, consistency, amount, shape, odor, and the
presence of mucus. The stool may be examined for hidden (occult) blood, fat,
meat fibers,
white blood cells, and sugars called reducing
substances. The
pH of the stool also may be measured. A stool
culture is done to find out if bacteria may be causing
an infection.

Why It Is Done

Stool analysis is done to:

  • Help identify diseases of the digestive tract,
    liver, and
    pancreas. Certain
    enzymes (such as trypsin or elastase) may be evaluated
    in the stool to help determine how well the pancreas is functioning.
  • Help find the cause of symptoms affecting the digestive tract,
    including prolonged diarrhea, bloody diarrhea, an increased amount of gas,
    nausea, vomiting, loss of appetite, bloating, abdominal pain and cramping, and
  • Screen for
    colon cancer by checking for hidden (occult)
  • Look for parasites, such as
    pinworms or
  • Look for the cause of an infection, such as
    bacteria, a
    fungus, or a virus.
  • Check for poor
    absorption of nutrients by the digestive tract (malabsorption syndrome). For
    this test, all stool is collected over a 72-hour period and then checked for
    fat (and sometimes for meat fibers). This test is called a 72-hour stool collection or
    quantitative fecal fat test.

Talk to your doctor about any concerns you have regarding
the need for the test, its risks, how it will be done, or what the results will
mean. To help you understand the importance of this test, fill out the
medical test information form (What is a PDF document?).

How To Prepare

Many medicines can change the results
of this test. You will need to avoid certain medicines depending on which
kind of stool analysis you have. You may need to stop taking medicines such as
antacids, antidiarrheal medicines, antiparasite medicines, antibiotics,
laxatives, or
nonsteroidal anti-inflammatory drugs (NSAIDs) for 1 to
2 weeks before you have the test. Be sure to tell your doctor about all the
nonprescription and prescription medicines you take.

Be sure to
tell your doctor if you have:

  • Recently had an
    X-ray test using barium
    contrast material, such as a
    barium enema or
    upper gastrointestinal series (barium swallow). Barium
    can interfere with test results.
  • Traveled in recent weeks or
    months, especially if you have traveled outside the country. This helps your doctor look for the parasites, fungi,
    viruses, or bacteria that may be causing a problem.

If your stool is being tested for blood, you may need to avoid certain foods for 2 to 3 days before the test. This depends on what kind of stool test you use. And do not do the test during your menstrual period or if you have active bleeding from hemorrhoids. If you aren’t sure about how to prepare, ask your doctor.

Do not use a stool sample for testing that has been in contact with toilet bowl cleaning products that turn the water blue.

How It Is Done

Stool samples can be collected at home,
in your doctor’s office, at a medical clinic, or at the hospital. If you
collect the samples at home, you will be given stool collection kits to use
each day. Each kit contains applicator sticks and two sterile

You may need to collect more than one sample over 1 to
3 days. Follow the same procedure for each day.

Collect the
samples as follows:

  • Urinate before collecting the stool so that you
    do not get any urine in the stool sample.
  • Put on gloves before
    handling your stool. Stool can contain germs that spread infection.
    Wash your hands after you remove your gloves.
  • Pass stool (but no
    urine) into a dry container. You may be given a plastic basin that can be
    placed under the toilet seat to catch the stool.

    • Either solid or liquid stool can be
    • If you have diarrhea, a large plastic bag taped to the
      toilet seat may make the collection process easier; the bag is then placed in a
      plastic container.
    • If you are constipated, you may be given a small
    • Do not collect the sample from the toilet
    • Do not mix toilet paper, water, or soap with the sample.
  • Place the lid on the container and label it with your name, your
    doctor’s name, and the date the stool was collected. Use one container for each
    day’s collection, and collect a sample only once a day unless your doctor gives
    you other directions.

Take the sealed container to your doctor’s office or the
laboratory as soon as possible. You may need to deliver your sample to the lab
within a certain time. Tell your doctor if you think you may have trouble
getting the sample to the lab on time.

If the stool is collected
in your doctor’s office or the hospital, you will pass the stool in a plastic
container that is inserted under the toilet seat or in a bedpan. A health
professional will package the sample for laboratory analysis.

will need to collect stool for 3 days in a row if the sample is being tested
for quantitative fats. You will begin collecting stool on the morning of the
first day. The samples are placed in a large container and then

You may need to collect several stool samples over 7
to 10 days if you have digestive symptoms after traveling outside the

Samples from babies and young children may be collected
from diapers (if the stool is not contaminated with urine) or from a
small-diameter glass tube inserted into the baby’s rectum while the baby is
held on an adult’s lap.

Sometimes a stool sample is collected
using a rectal swab that contains a preservative. The swab is inserted into the
rectum, rotated gently, and then withdrawn. It is placed in a clean, dry
container and sent to the lab right away.

How It Feels

There is no pain while collecting a stool
sample. If you are constipated, straining to pass stool may be painful.

If your health professional uses a rectal swab to collect the sample, you
may feel some pressure or discomfort as the swab is inserted into your


Any stool sample may contain germs that can
spread disease. It is important to carefully
wash your hands and use careful handling techniques to avoid spreading


A stool analysis is a series of tests
done on a stool (feces) sample to help diagnose certain conditions affecting
the digestive tract.

The normal values listed here-called a reference range-are just a guide. These ranges vary from lab to lab, and your lab may have a different range for what’s normal. Your lab report should contain the range your lab uses. Also, your doctor will evaluate your results based on your health and other factors. This means that a value that falls outside the normal values listed here may still be normal for you or your lab.

Stool analysis test
results usually take at least 1 to 3 days.

Stool analysis

The stool appears brown, soft, and
well-formed in consistency.

The stool does not contain blood, mucus,
pus, undigested meat fibers, harmful
fungi, or

The stool is shaped like a tube.

pH of the stool is 7.0-7.5.footnote 1

The stool contains less than 0.25 grams per deciliter (g/dL)[less than 13.9 millimoles per liter (mmol/L)] of sugars called reducing
factors.footnote 1

The stool contains 2-7 grams of fat per 24 hours (g/24h).footnote 1


The stool is black, red, white, yellow, or

The stool is liquid or very

There is too much stool.

The stool contains blood, mucus, pus,
undigested meat fibers, harmful bacteria, viruses, fungi, or parasites.

The stool contains low levels of
enzymes, such as trypsin or elastase.

The pH of the stool is less than 7.0 or
greater than 7.5.

The stool contains 0.25 g/dL
(13.9 mmol/L) or more of
sugars called reducing factors.

The stool contains more than 7 g/24h of fat (if
your fat intake is about 100 g a day).

Many conditions can change the results
of a stool analysis. Your doctor will talk with you about any abnormal results
that may be related to your symptoms and past health.

Abnormal values

  • High levels of fat in the stool may be
    caused by diseases such as
    sprue (celiac disease),
    cystic fibrosis, or other disorders that affect the
    absorption of fats.
  • The presence of undigested meat fibers in the
    stool may be caused by pancreatitis.
  • A low pH may be
    caused by poor absorption of
    carbohydrate or fat. Stool with a high pH may mean inflammation in the intestine (colitis), cancer, or antibiotic use.
  • Blood in the stool may be caused by bleeding
    in the digestive tract.
  • White blood cells in the stool may be caused by inflammation of the intestines, such
    ulcerative colitis, or a bacterial
  • Rotaviruses are
    a common cause of diarrhea in young children. If diarrhea is present, testing
    may be done to look for rotaviruses in the stool.
  • High levels of
    reducing factors in the stool may mean a problem digesting some
  • Low levels of reducing factors may be caused by sprue
    (celiac disease), cystic fibrosis, or malnutrition. Medicine such as colchicine
    gout) or birth control pills may also cause low

What Affects the Test

Reasons you may not be able to
have the test or why the results may not be helpful include:

  • Taking medicines such as antibiotics,
    antidiarrheal medicines, barium, bismuth, iron, ascorbic acid,
    nonsteroidal anti-inflammatory drugs (NSAIDs), and
  • Contaminating a stool sample with urine, blood from a menstrual period or a
    hemorrhoid, or chemicals found in toilet paper and
    paper towels.
  • Exposing the stool sample to air or room temperature
    or failing to send the sample to a laboratory within 1 hour of collection.

What To Think About

  • Stool may be checked for hidden (occult) blood.
    To learn more, see the topic
    Stool Tests for Colorectal Cancer.
  • A stool
    culture is done to find the cause of an infection, such as bacteria, a virus, a
    fungus, or a parasite. To learn more, see the topic
    Stool Culture.
  • A bowel transit time test
    is done to help find the cause of abnormal movement of food through the
    digestive tract. To learn more, see the topic
    Bowel Transit Time.
  • The D-xylose
    absorption test is done to help diagnose problems that prevent the small
    intestine from absorbing nutrients in food. This test may be done when symptoms
    of malabsorption syndrome (such as chronic diarrhea, weight loss, and weakness)
    are present. To learn more, see the topic
    D-Xylose Absorption Test.
  • A stool analysis
    to measure trypsin or elastase is not as reliable as the sweat test to detect
    cystic fibrosis. To learn more, see the topic
    Sweat Test.



  1. Fischbach FT, Dunning MB III, eds. (2009). Manual of Laboratory and Diagnostic Tests, 8th ed. Philadelphia: Lippincott Williams and Wilkins.

Other Works Consulted

  • Chernecky CC, Berger BJ (2008). Laboratory Tests and Diagnostic Procedures, 5th ed. St. Louis: Saunders.
  • Fischbach FT, Dunning MB III, eds. (2009). Manual of Laboratory and Diagnostic Tests, 8th ed. Philadelphia: Lippincott Williams and Wilkins.
  • Pagana KD, Pagana TJ (2010). Mosby’s Manual of Diagnostic and Laboratory Tests, 4th ed. St. Louis: Mosby Elsevier.


ByHealthwise Staff
Primary Medical Reviewer Adam Husney, MD – Family Medicine

Current as ofOctober 9, 2017

Current as of:
October 9, 2017